Projects & Network Collaborations

Collaborations

Over the last fifteen years, our group has established long-standing collaborations with numerous national and international research teams. Together, we develop and implement advanced computational workflows for analyzing genomic, epigenomic, and transcriptomic data, driving forward-thinking discoveries in the biomedical field. Below is a list of the institutions and laboratories we currently partner with:

• University of Florence
  Principal investigator: Prof. Francesco Annunziato
  Project: Development of novel computational methods for single-cell RNA-seq data analysis in immunology.
• University of Florence
  Principal investigator: Prof. Andrew David Bagdanov
  Project: Development and evaluation of representation learning methods optimized for the biomedical domain
  
• Institute for Informatics and Telematics (IIT-CNR), Pisa
  Principal investigator: Dr. Romina D’Aurizio
  Project: Development of computational methods for second- and third-generation sequencing data analysis.
• “Giovanni Paolo II” Cancer Institute, Bari
  Principal investigator: Dr. Simona De Summa
  Project: Development of novel computational methods for third-generation sequencing analysis of liquid biopsy in colorectal cancer.
• Careggi Hospital and University of Florence
  Principal investigator: Prof. Fabio Marra
  Project: Transcriptomic analysis of cholangiocarcinoma-derived organoids and cancer-associated fibroblasts
• University of Florence
  Principal investigator: Prof. Benedetta Nacmias
  Project: Third-generation sequencing data analysis in the study of genomic and epigenomic alterations in neurodegenerative diseases.
• University of Florence
  Principal investigator: Prof. Romina Nassini & Prof. Francesco De Logu
  Project: Nanopore sequencing data analysis for the identification of epigenomic modifications associated with chronic pain.
• European Oncology Institute (IEO), Milan
  Principal investigator: Prof. Pier Giuseppe Pelicci
  Project: Development of novel computational methods for nanopore sequencing analysis of genomic and epigenomic alterations in cancer.
• Meyer Children’s Hospital and University of Florence
  Principal investigator: Prof. Paola Romagnani
  Project: Development of novel computational methods for single-cell RNA-seq data analysis in nephrology.
• CEINGE - Advanced Biotechnologies, Naples
  Principal investigator: Prof. Francesco Salvatore
  Project: Development of novel computational methods for third-generation sequencing analysis of genomic and epigenomic alterations in colorectal cancer.
• Meyer Children’s Hospital and University of Florence
  Principal investigator: Prof. Augusto Vaglio
  Project: Nanopore sequencing data analysis in the study of genomic and epigenomic alterations in nephrological diseases.